Nathan decides to practice his own assertiveness in relationships by challenging Angela over their son's religious upbringing. Angela, a fervent Christian, refuses to allow Adam to be raised in Nathan's Jewish faith, so Nathan secretly brings his son to lessons with a tutor in Judaism under the pretense of swimming lessons. Seeking solace outside the house, Nathan opens his replica Alligator Lounge to the public under the name Nate's Lizard Lounge. The co-parents argue over a comedy skit featuring six-year-old Adam as 'Dr. Fart' and a joke about eating faeces, which Angela claims is a Satanic practice. Nathan rehearses the confrontations with a fake Angela, and in one scenario, she harshly criticizes Nathan's emotional detachment and questions the ethics of the entire production. However, in their real final confrontation, Angela simply decides to quit the rehearsal. Nathan continues to raise Adam, now as a single parent.
Jean Hargadon Wehner discusses how she came to remember years later the sexual abuse she suffered at Archbishop Keough High School. She also talks about what happened when she reported the abuse to Church officials and how she realized she was connected to the death of Sister Cathy Cesnik. As the can of worms is opened on the hidden world in the high school and the people begin to talk about what happened behind closed doors. With the Jean’s accusations, Abbie Schaub, Gemma Hoskins, and Tom Nugent learn about a story of a graveyard and a source nicknamed 'Deep Throat' who could hold the key.
Edgar Davidson agrees to talk to investigators but tells a different story. Cathy’s sister Marilyn indicates her interest in solving the case. Tom Nugent casts doubt on Gerry Koob’s story about the night of Cathy’s disappearance. The search for the other man at Cathy’s apartment Pete McKeon may have information about Koob’s relationship. What Cathy’s roommate Sister Russell knew about the abuse and Cathy’s relationship comes into question. 'Jane Doe' and 'Jane Roe' meet for the first time and talk about the Keough. Abbie investigates Baltimore’s investigation into the abuse reports they received. Marilyn Cesnik Radakovic recalls receiving a mysterious letter from her sister after her death.
In the second episode, Nathan develops a rehearsal for Angela, a woman considering motherhood. Nathan hires child actors to simulate adopting and caring for a baby and sets her up in a rented farmhouse in rural Oregon. Due to Oregon child protection laws, Nathan's team must covertly switch out the baby every four hours and replace it with a robot baby at night. Seeking a simulated husband, Angela dates Robbin, a numerology-obsessed man who wants to have sex with Angela despite her devout Christian beliefs against premarital sex. When Robbin quits the project due to the robot baby's incessant crying, Nathan inserts himself into the experiment as Angela's non-romantic co-parent.
Lil Hughes Knipp recalls meeting Father Maskell near his end... and knowing that he would never be charged. The search for Brother Bob and a potential killer begins, and the revelation of a potential suspect named Edgar Davidson comes forward with an interesting story. With more people coming forward, more suspects appear including a man named Billy Schmidt who lived in Cathy’s apartment. A contact from one of Cathy’s sisters could give new insight on the case.
Nathan stages a ninth birthday party for Adam, but faces a problem when Remy, one of the child actors who played Adam at age six, becomes attached to Nathan, calling him 'daddy' even after his scenes are over. Remy's mother explains that her son might have trouble understanding the difference between acting and reality. To discover what went wrong, Nathan repeats Remy's scenes with different actors including Liam (a nine-year-old Adam actor), an adult actor, and a mannequin. He then explores what might have happened if Angela had stayed with him and meets with the real Angela, who urges him to forgive himself, as her religious beliefs state. In an attempt to truly understand the connection between parent and child, Nathan stages a new scenario in which he is Remy's mother Amber and Liam portrays Remy. They re-create the experience of appearing on The Rehearsal and becoming attached to 'pretend daddy' Nathan. After coming to the emotional realization that they should not have done the show, Nathan as Amber seemingly breaks character and tells the fake Remy, 'I'm your daddy.'
Nathan rehearses the confrontations with a fake Angela, and in one scenario, she harshly criticizes Nathan's emotional detachment and questions the ethics of the entire production. However, in their real final confrontation, Angela simply decides to quit the rehearsal. Nathan continues to raise Adam, now as a single parent.