Diarmaid MacCulloch's own life story makes him a symbol of a distinctive feature about Western Christianity - scepticism, a tendency to doubt which has transformed both Western culture and Christianity. In the final programme in the series, he asks where that change came from. He challenges the simplistic notion that faith in Christianity has steadily ebbed away before the relentless advance of science, reason and progress, and shows instead how the tide of faith perversely flows back in. Despite the attacks of Newton, Voltaire, the French Revolutionaries and Darwin, Christianity has shown a remarkable resilience. The greatest damage to Christianity was actually inflicted to its moral credibility by the two great wars of the 20th century and by its entanglement with Fascism and Nazism. And yet it is during crisis that the Church has rediscovered deep and enduring truths about itself, which may even be a clue to its future.

Painted over five centuries ago, Filippo Lippi's nativity is like none other: it shows the birth of Christ in a dark, wooded wilderness. There are no shepherds, kings, ox, ass – there is no Joseph. Its beauty inspired Michelangelo, Leonardo da Vinci and Botticelli. But it also conceals a deeply personal story. It was painted for Cosimo de Medici, a wealthy banker who feared that his money was dragging him straight to hell. The artist's life was equally surprising. One of the most celebrated painters of his day, Filippo Lippi was also a Carmelite friar, but he was no stranger to the temptations of the flesh, to which he frequently yielded. Shortly before painting his Adoration, he caused uproar by seducing a twenty year-old nun. His paintings rejoice not only in divine beauty, but in the beauty of women. In later times, the Adoration's history was interwoven with that of rulers and dictators. It became a bargaining chip after Napoleon's allies seized twenty merchant ships. And in the 20th century, it was hidden by the Nazis in a potassium mine, where specialist american officers, known as Monuments Men, stumbled upon it. they were now told to get it ready to be shipped out. In an unprecedented turn of events they refused. This is the only known case in the whole of the Second World War of American officers refusing an order. It was sent to the National Gallery of Art, but in 1949 Lippi's Adoration was returned to Germany.

How did Hitler decide he was a messiah and persuade a whole nation to follow him to damnation? This is a subject that has been mined many times in fiction - Raiders Of The Lost Ark, Constantine, Hellboy, Bulletproof Monk and English horror writer James Herbert's book The Spear - as well as documentary. Based on Ken Anderson's 1995 book of the same name, this aims to show how the Nazi party was originally made up of several occult groups that believed a messiah was on the way to save Germany.

Soldiers and officers continually came into conflict with their consciences. How much freedom did individuals have? Were they executing Hitler's criminal plans, or was it the Wehrmacht's war? There were crimes against humanity, against civilians, prisoners of war, and there was the Holocaust itself. The Trent Park records discovered and analysed by historian Sönke Neitzel, author of Tapping Hitler's Generals, show that the 84 German generals who were interned at Trent Park were aware of the severity of the war crimes they had been involved in and that some discussed them almost compulsively. They included the Commissar Order, to kill any Soviet commissar, and Rathenau's order to kill the Jews, including children.

Among the ranks of the Wehrmacht there was limited opposition to Hitler. Most officers initially felt enthusiastic about the prospect of war and were grateful to Hitler whose war-mongering had furthered their personal careers. Furthermore all soldiers had to make an oath of allegiance to the Führer and, up until the very end, there were many who felt unable to break this pledge. There were, however, some officers who opposed Hitler. For some it was on moral grounds and for others because they thought that his military tactics would lose them the war. There were plots against Hitler and attempted coups, the best known being the July bomb plot led by Claus von Stauffenberg. Some soldiers refused to bear arms and were shot, others deserted, others still carried out quiet acts of sabotage and subversion. By and large, however, the Wehrmacht carried out the orders Hitler issued, even if it involved perpetrating acts of atrocity.

This episode examines the idea of scientific racism, an ideology invented during the 19th century that drew on now discredited practices such as phrenology and provided an ideological justification for racism and slavery. The episode shows how these theories ultimately led to eugenics and Nazi racial policies of the master race.